Genome
Data
System
Original Filename: SGD_features.tab
File Size: 3.17 MB
Created By: admin
Last Updated:
Parent Assembly:
GLBRC Y22-3 ( GCA_001634645.1 )
State: complete
Console:
loading - 2016-11-08 12:41:17 -0500 Loading 16454 datapoints - 2016-11-08 12:41:18 -0500 Loaded 4936 of 16454 datapoints - 2016-11-08 12:41:36 -0500 Un-loading 4936 datapoints - 2016-11-08 13:35:47 -0500 loading - 2016-11-08 13:35:56 -0500 Loading 16454 datapoints - 2016-11-08 13:35:56 -0500 Loaded 4936 of 16454 datapoints - 2016-11-08 13:36:14 -0500
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{"f"=>"10023", "k"=>"10801", "annotation"=>"5", "annotation_term"=>"standard_name", "id"=>"1", "header"=>"false", "skip"=>"true"}File Preview
SGD:S000002143 ORF Dubious YAL069W chromosome 1 1 335 649 W 1996-07-31 1996-07-31 Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data
SGD:S000031098 CDS YAL069W 1 335 649 W 1996-07-31 1996-07-31
SGD:S000028594 ORF Dubious YAL068W-A chromosome 1 1 538 792 W 2003-07-29 2003-07-29 Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching
SGD:S000031372 CDS YAL068W-A 1 538 792 W 2003-07-29 2003-07-29
SGD:S000121252 ARS ARS102 ARSI-1 chromosome 1 1 707 776 2014-11-18 2014-11-18|2007-03-07 Autonomously Replicating Sequence
SGD:S000028862 telomere TEL01L chromosome 1 1 801 1 C -64 2003-09-09 2003-09-09 Telomeric region on the left arm of Chromosome I; composed of an X element core sequence, X element combinatorial repeats, and a short terminal stretch of telomeric repeats
SGD:S000028864 telomeric_repeat TEL01L 1 62 1 C 2003-09-09 2003-09-09 Terminal telomeric repeats on the left arm of Chromosome I
SGD:S000028865 X_element TEL01L 1 801 337 C 2003-09-09 2003-09-09 Telomeric X element Core sequence on the left arm of Chromosome I; contains an ARS consensus sequence, an Abf1p binding site consensus sequence and two small overlapping ORFs (YAL068W-A and YAL069W)
SGD:S000028866 X_element_combinatorial_repeat TEL01L 1 336 63 C 2003-09-09 2003-09-09 Telomeric X element combinatorial repeat on the left arm of Chr I; contains repeats of the D, C, B and A types, as well as Tbf1p binding sites; formerly called SubTelomeric Repeats
SGD:S000002142 ORF Verified YAL068C PAU8 seripauperin PAU8 chromosome 1 1 2169 1807 C 1996-07-31 1996-07-31 Protein of unknown function; member of the seripauperin multigene family encoded mainly in subtelomeric regions
SGD:S000030944 CDS YAL068C 1 2169 1807 C 1996-07-31 1996-07-31
SGD:S000028593 ORF Uncharacterized YAL067W-A chromosome 1 1 2480 2707 W 2003-07-29 2003-07-29 Putative protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching
SGD:S000031368 CDS YAL067W-A 1 2480 2707 W 2003-07-29 2003-07-29
SGD:S000121253 ARS ARS103 ARSI-8 chromosome 1 1 7997 8547 2011-02-03 2007-03-07 Autonomously Replicating Sequence; replication origin of very weak function
SGD:S000000062 ORF Verified YAL067C SEO1 putative permease SEO1 chromosome 1 L000003363 1 9016 7235 C 2011-02-03 1996-07-31 Putative permease; member of the allantoate transporter subfamily of the major facilitator superfamily; mutation confers resistance to ethionine sulfoxide
SGD:S000029932 CDS YAL067C 1 9016 7235 C 2011-02-03 1996-07-31
SGD:S000000061 ORF Dubious YAL066W chromosome 1 1 10091 10399 W 2011-02-03 1996-07-31 Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data
SGD:S000029887 CDS YAL066W 1 10091 10399 W 2011-02-03 1996-07-31
SGD:S000001817 ORF Uncharacterized YAL065C chromosome 1 1 11951 11565 C 2011-02-03 1996-07-31 Putative protein of unknown function; shows sequence similarity to FLO1 and other flocculins
SGD:S000037154 CDS YAL065C 1 11951 11565 C 2011-02-03 1996-07-31
SGD:S000002141 ORF Uncharacterized YAL064W-B chromosome 1 1 12046 12426 W 2011-02-03 1999-07-17 Fungal-specific protein of unknown function
SGD:S000034793 CDS YAL064W-B 1 12046 12426 W 2011-02-03 1999-07-17
SGD:S000002140 ORF Uncharacterized YAL064C-A TDA8 YAL065C-A chromosome 1 1 13743 13363 C 2011-02-03 1996-07-31 Putative protein of unknown function; null mutant is sensitive to expression of the top1-T722A allele; not an essential gene
SGD:S000031541 CDS YAL064C-A 1 13743 13363 C 2011-02-03 1996-07-31
SGD:S000000060 ORF Verified YAL064W chromosome 1 1 21566 21850 W 2011-02-03 1996-07-31|2011-02-03 Protein of unknown function; may interact with ribosomes, based on co-purification experiments
SGD:S000037087 CDS YAL064W 1 21566 21850 W 2011-02-03 1996-07-31|2011-02-03
SGD:S000006787 long_terminal_repeat YALWdelta1 chromosome 1 1 22230 22552 W 2011-02-03 2000-05-19 Ty1 LTR
SGD:S000028813 ORF Uncharacterized YAL063C-A chromosome 1 1 22685 22395 C 2011-02-03 2003-07-29 Putative protein of unknown function; identified by expression profiling and mass spectrometry
SGD:S000033613 CDS YAL063C-A 1 22685 22395 C 2011-02-03 2003-07-29
SGD:S000000059 ORF Verified YAL063C FLO9 flocculin FLO9 chromosome 1 L000003331 1 27968 24000 C 2011-02-03 1996-07-31 Lectin-like protein with similarity to Flo1p; thought to be expressed and involved in flocculation
SGD:S000036982 CDS YAL063C 1 27968 24000 C 2011-02-03 1996-07-31
SGD:S000118317 ARS ARS104 ARSI-31 chromosome 1 1 30946 31183 2011-02-03 2006-08-30 Autonomously Replicating Sequence
SGD:S000178034 ARS_consensus_sequence ARS104 1 31002 31018 W 2014-11-18 2014-11-18
SGD:S000000058 ORF Verified YAL062W GDH3 glutamate dehydrogenase (NADP(+)) GDH3|FUN51 chromosome 1 L000000698 1 31567 32940 W 2011-02-03 1996-07-31 NADP(+)-dependent glutamate dehydrogenase; synthesizes glutamate from ammonia and alpha-ketoglutarate; rate of alpha-ketoglutarate utilization differs from Gdh1p; expression regulated by nitrogen and carbon sources; GDH3 has a paralog, GDH1, that arose from the whole genome duplication
SGD:S000036963 CDS YAL062W 1 31567 32940 W 2011-02-03 1996-07-31
SGD:S000000057 ORF Uncharacterized YAL061W BDH2 putative dehydrogenase BDH2 chromosome 1 1 33448 34701 W 2011-02-03 1996-07-31 Putative medium-chain alcohol dehydrogenase with similarity to BDH1; transcription induced by constitutively active PDR1 and PDR3
SGD:S000036902 CDS YAL061W 1 33448 34701 W 2011-02-03 1996-07-31
SGD:S000000056 ORF Verified YAL060W BDH1 (R,R)-butanediol dehydrogenase|BDH chromosome 1 1 35155 36303 W 2011-02-03 1996-07-31|2011-02-03 NAD-dependent (R,R)-butanediol dehydrogenase; catalyzes oxidation of (R,R)-2,3-butanediol to (3R)-acetoin, oxidation of meso-butanediol to (3S)-acetoin, and reduction of acetoin; enhances use of 2,3-butanediol as an aerobic carbon source
SGD:S000036089 CDS YAL060W 1 35155 36303 W 2011-02-03 1996-07-31|2011-02-03
SGD:S000000055 ORF Verified YAL059W ECM1 chromosome 1 L000003052 1 36509 37147 W 2011-02-03 1996-07-31|2011-02-03 Pre-ribosomal factor involved in 60S ribosomal protein subunit export; associates with the pre-60S particle; shuttles between the nucleus and cytoplasm
SGD:S000035122 CDS YAL059W 1 36509 37147 W 2011-02-03 1996-07-31|2011-02-03
SGD:S000028734 ORF Dubious YAL059C-A chromosome 1 1 36918 36496 C 2011-02-03 2003-07-29|2011-02-03 Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps verified gene ECM1/YAL059W
SGD:S000033378 CDS YAL059C-A 1 36918 36496 C 2011-02-03 2003-07-29|2011-02-03
SGD:S000000054 ORF Verified YAL058W CNE1 calnexin|FUN48 chromosome 1 L000000373 1 37464 38972 W 2011-02-03 1996-07-31 Calnexin; integral membrane ER chaperone involved in folding and quality control of glycoproteins; chaperone activity is inhibited by Mpd1p, with which Cne1p interacts; 24% identical to mammalian calnexin; Ca+ binding not yet shown in yeast
SGD:S000034933 CDS YAL058W 1 37464 38972 W 2011-02-03 1996-07-31
SGD:S000002139 ORF Dubious YAL056C-A YAL058C-A chromosome 1 1 39046 38696 C 2011-02-03 1996-07-31 Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data
SGD:S000035879 CDS YAL056C-A 1 39046 38696 C 2011-02-03 1996-07-31
SGD:S000000052 ORF Verified YAL056W GPB2 KRH1 chromosome 1 1 39259 41901 W 2011-02-03 2004-01-20|1996-07-31|2011-02-03 Multistep regulator of cAMP-PKA signaling; inhibits PKA downstream of Gpa2p and Cyr1p, thereby increasing cAMP dependency; inhibits Ras activity through direct interactions with Ira1p/2p; regulated by G-alpha protein Gpa2p; GPB2 has a paralog, GPB1, that arose from the whole genome duplication
SGD:S000033885 CDS YAL056W 1 39259 41901 W 2011-02-03 2004-01-20|1996-07-31|2011-02-03
SGD:S000121254 ARS ARS105 ARSI-42 chromosome 1 1 41992 42151 2014-11-18 2014-11-18|2007-03-07 Autonomously Replicating Sequence
Loaded Annotations
4,936
Total Features
4,936
Total Features
 Feature |
Annotation Term |
Value |
|---|---|---|
| MHP1 | standard_name | MHP1 |
| LOH1 | standard_name | LOH1 |
| IRC18 | standard_name | IRC18 |
| SNX4 | standard_name | SNX4 |
| PET191 | standard_name | PET191 |
| RAD26 | standard_name | RAD26 |
| HUL4 | standard_name | HUL4 |
| GEF1 | standard_name | GEF1 |
| URB2 | standard_name | URB2 |
| NUP85 | standard_name | NUP85 |
| POL32 | standard_name | POL32 |
| VPS55 | standard_name | VPS55 |
| SSC1 | standard_name | SSC1 |
| TAH11 | standard_name | TAH11 |
| ADE1 | standard_name | ADE1 |
| KIN3 | standard_name | KIN3 |
| CDC15 | standard_name | CDC15 |
| POL31 | standard_name | POL31 |
| SUI2 | standard_name | SUI2 |
| MHO1 | standard_name | MHO1 |
| TDH2 | standard_name | TDH2 |
| MET3 | standard_name | MET3 |
| SPC1 | standard_name | SPC1 |
| GPI14 | standard_name | GPI14 |
| TMA22 | standard_name | TMA22 |
| ILV3 | standard_name | ILV3 |
| ESS1 | standard_name | ESS1 |
| TES1 | standard_name | TES1 |
| REC107 | standard_name | REC107 |
| LSM8 | standard_name | LSM8 |
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