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Uploads: Bam - 11380

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Original Filename: stem.sorted.bam

File Size: 94.1 MB

Created By: admin

Last Updated:

Parent Sample: stem

State: complete

Console:

2014-03-31 12:50:35 -0400 Creating Bam Index
2014-03-31 15:18:37 -0400 Creating Bam Index
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2014-03-31 15:18:39 -0400 Creating BigWig File
--Running Bedtools genomeCoverageBed -split -bg;
--Converting
2014-03-31 15:18:57 -0400 Done
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----
2014-03-31 15:18:57 -0400 Creating BigWig File
--Running Bedtools genomeCoverageBed -split -bg;
--- strand: '+'  samtools view -f 99
--- strand: '+'  samtools view -f 147
--- Merging files
--Converting
2014-03-31 15:33:09 -0400 Creating Bam Index
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2014-03-31 15:33:12 -0400 Creating BigWig File
--Running Bedtools genomeCoverageBed -split -bg;
--- strand: '+'  samtools view -f 99
--- strand: '+'  samtools view -f 147
--- Merging files
Error: Empty bed file
----
2014-03-31 15:33:16 -0400 Creating BigWig File
--Running Bedtools genomeCoverageBed -split -bg;
--- strand: '-'  samtools view -f 83
--- strand: '-'  samtools view -f 163
--- Merging files
Error: Empty bed file
2014-03-31 15:45:19 -0400 Creating Bam Index
2014-04-01 14:48:47 -0400 Creating Bam Index
----
2014-04-01 14:48:50 -0400 Creating BigWig File
--Running Bedtools genomeCoverageBed -split -bg;
--- strand: '+'  samtools view -f 99
--- strand: '+'  samtools view -f 147
--- Merging files
Error: Empty bed file
----
2014-04-01 14:48:55 -0400 Creating BigWig File
--Running Bedtools genomeCoverageBed -split -bg;
--- strand: '-'  samtools view -f 83
--- strand: '-'  samtools view -f 163
--- Merging files
Error: Empty bed file
2015-05-14 09:02:29 -0400 Creating Bam Index
open: No such file or directory
[bam_index_build2] fail to open the BAM file.

--Adding Symlink







Total Mapped Reads: 508538

SeqID Length Mapped Un-Mapped
10dpa_clean(single)contig1 701 2 0
10dpa_clean(single)contig2 576 3 0
10dpa_clean(single)contig3 404 1 0
10dpa_clean(single)contig4 1,741 23 0
10dpa_clean(single)contig7 618 10 0
10dpa_clean(single)contig11 1,359 18 0
10dpa_clean(single)contig12 323 2 0
10dpa_clean(single)contig16 367 7 0
10dpa_clean(single)contig17 306 1 0
10dpa_clean(single)contig18 452 1 0
10dpa_clean(single)contig19 870 11 0
10dpa_clean(single)contig21 819 7 0
10dpa_clean(single)contig22 410 2 0
10dpa_clean(single)contig23 408 1 0
10dpa_clean(single)contig24 206 3 0
10dpa_clean(single)contig26 461 2 0
10dpa_clean(single)contig28 348 1 0
10dpa_clean(single)contig29 471 4 0
10dpa_clean(single)contig33 356 1 0
10dpa_clean(single)contig35 1,008 5 0
10dpa_clean(single)contig36 631 1 0
10dpa_clean(single)contig38 687 8 0
10dpa_clean(single)contig39 259 1 0
10dpa_clean(single)contig41 629 3 0
10dpa_clean(single)contig42 643 1 0
10dpa_clean(single)contig44 1,424 35 0
10dpa_clean(single)contig47 238 1 0
10dpa_clean(single)contig48 241 1 0
10dpa_clean(single)contig53 382 3 0
10dpa_clean(single)contig61 475 1 0
10dpa_clean(single)contig64 1,252 9 0
10dpa_clean(single)contig66 349 1 0
10dpa_clean(single)contig73 390 2 0
10dpa_clean(single)contig78 286 3 0
10dpa_clean(single)contig79 1,228 6 0
10dpa_clean(single)contig83 476 3 0
10dpa_clean(single)contig85 238 1 0
10dpa_clean(single)contig87 696 3 0
10dpa_clean(single)contig88 469 1 0
10dpa_clean(single)contig91 1,802 21 0
10dpa_clean(single)contig93 229 1 0
10dpa_clean(single)contig94 642 6 0
10dpa_clean(single)contig95 278 1 0
10dpa_clean(single)contig96 1,279 28 0
10dpa_clean(single)contig106 599 4 0
10dpa_clean(single)contig107 547 1 0
10dpa_clean(single)contig110 905 12 0
10dpa_clean(single)contig114 348 1 0
10dpa_clean(single)contig116 474 1 0
10dpa_clean(single)contig119 1,266 30 0
... 27990 more suppressed