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Uploads: Bam - 11382

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Original Filename: 8dpa.sorted.bam

File Size: 13 MB

Created By: admin

Last Updated:

Parent Sample: 8dpa

State: complete

Console:

2014-03-31 15:33:28 -0400 Creating Bam Index
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2014-03-31 15:33:29 -0400 Creating BigWig File
--Running Bedtools genomeCoverageBed -split -bg;
--Converting
2014-03-31 15:33:32 -0400 Done
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2014-03-31 15:33:32 -0400 Creating BigWig File
--Running Bedtools genomeCoverageBed -split -bg;
--- strand: '+'  samtools view -f 99
--- strand: '+'  samtools view -f 147
--- Merging files
Error: Empty bed file
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2014-03-31 15:33:33 -0400 Creating BigWig File
--Running Bedtools genomeCoverageBed -split -bg;
--- strand: '-'  samtools view -f 83
--- strand: '-'  samtools view -f 163
--- Merging files
Error: Empty bed file
2014-04-01 14:52:00 -0400 Creating Bam Index
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2014-04-01 14:52:00 -0400 Creating BigWig File
--Running Bedtools genomeCoverageBed -split -bg;
--- strand: '+'  samtools view -f 99
--- strand: '+'  samtools view -f 147
--- Merging files
Error: Empty bed file
----
2014-04-01 14:52:01 -0400 Creating BigWig File
--Running Bedtools genomeCoverageBed -split -bg;
--- strand: '-'  samtools view -f 83
--- strand: '-'  samtools view -f 163
--- Merging files
Error: Empty bed file
2015-05-14 09:02:29 -0400 Creating Bam Index
open: No such file or directory
[bam_index_build2] fail to open the BAM file.

--Adding Symlink







Total Mapped Reads: 121981

SeqID Length Mapped Un-Mapped
10dpa_clean(single)contig1 701 9 0
10dpa_clean(single)contig2 576 1 0
10dpa_clean(single)contig3 404 1 0
10dpa_clean(single)contig4 1,741 1 0
10dpa_clean(single)contig7 618 3 0
10dpa_clean(single)contig8 456 2 0
10dpa_clean(single)contig14 409 1 0
10dpa_clean(single)contig15 261 1 0
10dpa_clean(single)contig16 367 12 0
10dpa_clean(single)contig18 452 3 0
10dpa_clean(single)contig23 408 1 0
10dpa_clean(single)contig24 206 12 0
10dpa_clean(single)contig26 461 2 0
10dpa_clean(single)contig33 356 5 0
10dpa_clean(single)contig34 433 4 0
10dpa_clean(single)contig35 1,008 5 0
10dpa_clean(single)contig36 631 9 0
10dpa_clean(single)contig38 687 3 0
10dpa_clean(single)contig39 259 8 0
10dpa_clean(single)contig42 643 1 0
10dpa_clean(single)contig44 1,424 4 0
10dpa_clean(single)contig45 275 2 0
10dpa_clean(single)contig46 234 5 0
10dpa_clean(single)contig54 200 1 0
10dpa_clean(single)contig64 1,252 2 0
10dpa_clean(single)contig65 331 1 0
10dpa_clean(single)contig66 349 8 0
10dpa_clean(single)contig67 595 8 0
10dpa_clean(single)contig68 320 1 0
10dpa_clean(single)contig69 220 1 0
10dpa_clean(single)contig71 378 11 0
10dpa_clean(single)contig78 286 7 0
10dpa_clean(single)contig82 366 7 0
10dpa_clean(single)contig86 267 1 0
10dpa_clean(single)contig87 696 2 0
10dpa_clean(single)contig91 1,802 11 0
10dpa_clean(single)contig94 642 3 0
10dpa_clean(single)contig96 1,279 2 0
10dpa_clean(single)contig99 488 6 0
10dpa_clean(single)contig100 238 1 0
10dpa_clean(single)contig101 200 1 0
10dpa_clean(single)contig102 441 7 0
10dpa_clean(single)contig109 473 1 0
10dpa_clean(single)contig112 255 1 0
10dpa_clean(single)contig113 403 2 0
10dpa_clean(single)contig115 332 1 0
10dpa_clean(single)contig116 474 1 0
10dpa_clean(single)contig119 1,266 8 0
10dpa_clean(single)contig121 315 2 0
10dpa_clean(single)contig122 909 2 0
... 12635 more suppressed