Genome
Data
System
| Label |  Type |
Attributes | Start Pos |
End Pos |
Strand |
Assembly | Options |
|---|---|---|---|---|---|---|---|
| region |
[+]
| | | id0 | | I | | | | | | | taxon:4932 | | Src | genomic DNA | GLBRCY22-3 | Costa Rica | banana | chromosome | I | | | |
|
1 | 214974 | F | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence | |
| gene |
[+]
| | | gene0 | | WN66_00001 | | YAL069W~Dubious | WN66_00001 | protein_coding | | Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data | SGD:S000002143 | | Gene | | | | | | | | | |
|
828 | 1139 | F | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence | |
| mRNA |
[+]
| hypothetical protein | | rna0 | gene0 | | | | | | | | SGD:S000002143 | | mRNA | | | | | | | | | |
|
828 | 1139 | F | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence | |
| exon |
[+]
| hypothetical protein | | id1 | rna0 | | | | | | | | SGD:S000002143 | | mRNA | | | | | | | | | |
|
828 | 1139 | F | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence | |
| CDS |
[+]
| hypothetical protein | | cds0 | rna0 | KZV13394.1 | | | | | KZV13394.1 | | NCBI_GP:KZV13394.1; SGD:S000002143 | | CDS | | | | | | | | | |
|
828 | 1139 | F | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence | |
| sequence_feature |
[+]
| | | id2 | | | | repeat_region~TEL01L-XC~annotation lifted over from S288C-R64 reference | | | | | SGD:S000028865 | | misc_feature | | | | | | | | | |
|
830 | 1291 | R | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence | |
| gene |
[+]
| | | gene1 | | WN66_00002 | | YAL068W-A~Dubious | WN66_00002 | protein_coding | | Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching | SGD:S000028594 | | Gene | | | | | | | | | |
|
1028 | 1282 | F | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence | |
| mRNA |
[+]
| hypothetical protein | | rna1 | gene1 | | | | | | | | SGD:S000028594 | | mRNA | | | | | | | | | |
|
1028 | 1282 | F | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence | |
| exon |
[+]
| hypothetical protein | | id3 | rna1 | | | | | | | | SGD:S000028594 | | mRNA | | | | | | | | | |
|
1028 | 1282 | F | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence | |
| CDS |
[+]
| hypothetical protein | | cds1 | rna1 | KZV13395.1 | | | | | KZV13395.1 | | NCBI_GP:KZV13395.1; SGD:S000028594 | | CDS | | | | | | | | | |
|
1028 | 1282 | F | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence | |
| PAU8 | gene |
[+]
| | | gene2 | | WN66_00003 | PAU8 | YAL068C~PAU8~Verified | WN66_00003 | protein_coding | | Protein of unknown function; member of the seripauperin multigene family encoded mainly in subtelomeric regions | SGD:S000002142 | | Gene | | | | | | | | | |
|
2304 | 2666 | R | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence |
| PAU8 | mRNA |
[+]
| PAU8 | | rna2 | gene2 | | PAU8 | | | | | | SGD:S000002142 | | mRNA | | | | | | | | | |
|
2304 | 2666 | R | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence |
| exon |
[+]
| PAU8 | | id4 | rna2 | | | | | | | | SGD:S000002142 | | mRNA | | | | | | | | | |
|
2304 | 2666 | R | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence | |
| CDS |
[+]
| PAU8 | | cds2 | rna2 | KZV13396.1 | | | | | KZV13396.1 | | NCBI_GP:KZV13396.1; SGD:S000002142 | | CDS | | | | | | | | | |
|
2304 | 2666 | R | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence | |
| gene |
[+]
| | true | gene3 | | WN66_00004 | | YAL067W-A~Uncharacterized | WN66_00004 | pseudogene | | Putative protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching | SGD:S000028593 | | Gene | | | | | | | | | |
|
2979 | 3206 | F | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence | |
| gene |
[+]
| | true | gene4 | | WN66_00005 | | hYIR044C | WN66_00005 | pseudogene | | | | | Gene | | | | | | | | | |
|
4296 | 4466 | R | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence | |
| SEO1 | gene |
[+]
| | | gene5 | | WN66_00006 | SEO1 | YAL067C~SEO1~Verified | WN66_00006 | protein_coding | | Putative permease; member of the allantoate transporter subfamily of the major facilitator superfamily; mutation confers resistance to ethionine sulfoxide | SGD:S000000062 | | Gene | | | | | | | | | |
|
7749 | 9530 | R | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence |
| SEO1 | mRNA |
[+]
| SEO1 | | rna3 | gene5 | | SEO1 | | | | | | SGD:S000000062 | | mRNA | | | | | | | | | |
|
7749 | 9530 | R | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence |
| exon |
[+]
| SEO1 | | id5 | rna3 | | | | | | | | SGD:S000000062 | | mRNA | | | | | | | | | |
|
7749 | 9530 | R | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence | |
| CDS |
[+]
| SEO1 | | cds3 | rna3 | KZV13397.1 | | | | | KZV13397.1 | | NCBI_GP:KZV13397.1; SGD:S000000062 | | CDS | | | | | | | | | |
|
7749 | 9530 | R | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence | |
| sequence_feature |
[+]
| | | id6 | | | | ARS~ARS103~ARSI-8~annotation lifted over from S288C-R64 reference | | | | | SGD:S000121253 | | misc_feature | | | | | | | | | |
|
8511 | 9061 | F | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence | |
| gene |
[+]
| | | gene6 | | WN66_00007 | | YAL066W~Dubious | WN66_00007 | protein_coding | | Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data | SGD:S000000061 | | Gene | | | | | | | | | |
|
10610 | 10918 | F | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence | |
| mRNA |
[+]
| hypothetical protein | | rna4 | gene6 | | | | | | | | SGD:S000000061 | | mRNA | | | | | | | | | |
|
10610 | 10918 | F | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence | |
| exon |
[+]
| hypothetical protein | | id7 | rna4 | | | | | | | | SGD:S000000061 | | mRNA | | | | | | | | | |
|
10610 | 10918 | F | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence | |
| CDS |
[+]
| hypothetical protein | | cds4 | rna4 | KZV13398.1 | | | | | KZV13398.1 | | NCBI_GP:KZV13398.1; SGD:S000000061 | | CDS | | | | | | | | | |
|
10610 | 10918 | F | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence | |
| gene |
[+]
FLO59 | | | gene7 | | FLO59 | | YAL063C | WN66_00008 | protein_coding | | | | | Gene | | | | | | | | | |
|
12084 | 14609 | R | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence | |
| mRNA |
[+]
FLO59 | lectin-like cell wall protein (flocculin) involved in flocculation | | rna5 | gene7 | | | | | | | | | | mRNA | | | | | | | | | |
|
12084 | 14609 | R | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence | |
| exon |
[+]
FLO59 | lectin-like cell wall protein (flocculin) involved in flocculation | | id8 | rna5 | | | | | | | | | | mRNA | | | | | | | | | |
|
12084 | 14609 | R | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence | |
| CDS |
[+]
FLO59 | lectin-like cell wall protein (flocculin) involved in flocculation | | cds5 | rna5 | KZV13399.1 | | | | | KZV13399.1 | | NCBI_GP:KZV13399.1 | | CDS | | | | | | | | | |
|
12084 | 14609 | R | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence | |
| gene |
[+]
| | | gene8 | | WN66_00009 | | YAL064W-B~Uncharacterized | WN66_00009 | protein_coding | | Fungal-specific protein of unknown function | SGD:S000002141 | | Gene | | | | | | | | | |
|
12538 | 12939 | F | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence | |
| mRNA |
[+]
| hypothetical protein | | rna6 | gene8 | | | | | | | | SGD:S000002141 | | mRNA | | | | | | | | | |
|
12538 | 12939 | F | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence | |
| exon |
[+]
| hypothetical protein | | id9 | rna6 | | | | | | | | SGD:S000002141 | | mRNA | | | | | | | | | |
|
12538 | 12939 | F | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence | |
| CDS |
[+]
| hypothetical protein | | cds6 | rna6 | KZV13400.1 | | | | | KZV13400.1 | | NCBI_GP:KZV13400.1; SGD:S000002141 | | CDS | | | | | | | | | |
|
12538 | 12939 | F | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence | |
| GDH3 | gene |
[+]
| | | gene9 | | WN66_00010 | GDH3 | YAL062W~GDH3,FUN51~Verified | WN66_00010 | protein_coding | | NADP(+)-dependent glutamate dehydrogenase; synthesizes glutamate from ammonia and alpha-ketoglutarate; rate of alpha-ketoglutarate utilization differs from Gdh1p; expression regulated by nitrogen and carbon sources; GDH3 has a paralog, GDH1, that arose from the whole genome duplication | SGD:S000000058 | | Gene | | | | | | | | | |
|
18203 | 19576 | F | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence |
| GDH3 | mRNA |
[+]
| GDH3 | | rna7 | gene9 | | GDH3 | | | | | | SGD:S000000058 | | mRNA | | | | | | | | | |
|
18203 | 19576 | F | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence |
| exon |
[+]
| GDH3 | | id10 | rna7 | | | | | | | | SGD:S000000058 | | mRNA | | | | | | | | | |
|
18203 | 19576 | F | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence | |
| CDS |
[+]
| GDH3 | | cds7 | rna7 | KZV13401.1 | | | | | KZV13401.1 | | NCBI_GP:KZV13401.1; SGD:S000000058 | | CDS | | | | | | | | | |
|
18203 | 19576 | F | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence | |
| BDH2 | gene |
[+]
| | | gene10 | | WN66_00011 | BDH2 | YAL061W~BDH2~Uncharacterized | WN66_00011 | protein_coding | | Putative medium-chain alcohol dehydrogenase with similarity to BDH1; transcription induced by constitutively active PDR1 and PDR3 | SGD:S000000057 | | Gene | | | | | | | | | |
|
20085 | 21338 | F | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence |
| BDH2 | mRNA |
[+]
| BDH2 | | rna8 | gene10 | | BDH2 | | | | | | SGD:S000000057 | | mRNA | | | | | | | | | |
|
20085 | 21338 | F | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence |
| exon |
[+]
| BDH2 | | id11 | rna8 | | | | | | | | SGD:S000000057 | | mRNA | | | | | | | | | |
|
20085 | 21338 | F | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence | |
| CDS |
[+]
| BDH2 | | cds8 | rna8 | KZV13402.1 | | | | | KZV13402.1 | | NCBI_GP:KZV13402.1; SGD:S000000057 | | CDS | | | | | | | | | |
|
20085 | 21338 | F | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence | |
| BDH1 | gene |
[+]
| | | gene11 | | WN66_00012 | BDH1 | YAL060W~BDH1,BDH~Verified | WN66_00012 | protein_coding | | NAD-dependent (R,R)-butanediol dehydrogenase; catalyzes oxidation of (R,R)-2,3-butanediol to (3R)-acetoin, oxidation of meso-butanediol to (3S)-acetoin, and reduction of acetoin; enhances use of 2,3-butanediol as an aerobic carbon source | SGD:S000000056 | | Gene | | | | | | | | | |
|
21794 | 22942 | F | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence |
| BDH1 | mRNA |
[+]
| BDH1 | | rna9 | gene11 | | BDH1 | | | | | | SGD:S000000056 | | mRNA | | | | | | | | | |
|
21794 | 22942 | F | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence |
| exon |
[+]
| BDH1 | | id12 | rna9 | | | | | | | | SGD:S000000056 | | mRNA | | | | | | | | | |
|
21794 | 22942 | F | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence | |
| CDS |
[+]
| BDH1 | | cds9 | rna9 | KZV13403.1 | | | | | KZV13403.1 | | NCBI_GP:KZV13403.1; SGD:S000000056 | | CDS | | | | | | | | | |
|
21794 | 22942 | F | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence | |
| gene |
[+]
| | | gene12 | | WN66_00013 | | YAL059C-A~Dubious | WN66_00013 | protein_coding | | Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps verified gene ECM1/YAL059W | SGD:S000028734 | | Gene | | | | | | | | | |
|
23134 | 23556 | R | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence | |
| mRNA |
[+]
| hypothetical protein | | rna10 | gene12 | | | | | | | | SGD:S000028734 | | mRNA | | | | | | | | | |
|
23134 | 23556 | R | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence | |
| exon |
[+]
| hypothetical protein | | id13 | rna10 | | | | | | | | SGD:S000028734 | | mRNA | | | | | | | | | |
|
23134 | 23556 | R | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence | |
| CDS |
[+]
| hypothetical protein | | cds10 | rna10 | KZV13404.1 | | | | | KZV13404.1 | | NCBI_GP:KZV13404.1; SGD:S000028734 | | CDS | | | | | | | | | |
|
23134 | 23556 | R | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence | |
| ECM1 | gene |
[+]
| | true | gene13 | | WN66_00014 | ECM1 | YAL059W~ECM1~Verified | WN66_00014 | pseudogene | | Pre-ribosomal factor involved in 60S ribosomal protein subunit export; associates with the pre-60S particle; shuttles between the nucleus and cytoplasm | SGD:S000000055 | | Gene | | | | | | | | | |
|
23147 | 23785 | F | GLBRC Y22-3 ( GCA_001634645.1 ) | Details | Sequence |
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